Author

Yuko Tsunetsugu

Department of Physics, Nagoya University - Cited by 17,370 - Computational Physics - Computational Chemistry - Biophysics - Molecular Simulation

Biography

Forestry and Forest Products Research Institute, 1 Matsunosato, Tsukuba City, Ibaraki Prefecture 305-8687, Japan. He  has published more than 30 articles, In the field of Environment, Geospatial Science, Natural Disasters,Earth Sciences, Geographic Information System. 
Title
Cited by
Year
Structure–function insights into direct lipid transfer between membranes by Mmm1–Mdm12 of ERMES
S Kawano, Y Tamura, R Kojima, S Bala, E Asai, AH Michel, B Kornmann, ...Journal of Cell Biology 217 (3), 959-974, 2018201
112
2018
QM/MM free energy simulations: Recent progress and challenges
X Lu, D Fang, S Ito, Y Okamoto, V Ovchinnikov, Q CuiMolecular simulation 42 (13), 1056-1078, 2016201
94
2016
N+-C-H···O Hydrogen bonds in protein-ligand complexes
Y Itoh, Y Nakashima, S Tsukamoto, T Kurohara, M Suzuki, Y Sakae, ...Scientific reports 9 (1), 767, 2019201
92
2019
Conformational effects of N-glycan core fucosylation of immunoglobulin G Fc region on its interaction with Fcγ receptor IIIa
Y Sakae, T Satoh, H Yagi, S Yanaka, T Yamaguchi, Y Isoda, S Iida, ...Scientific reports 7 (1), 13780, 2017201
76
2017
Conformational Change of Amyloid-β 40 in Association with Binding to GM1-Glycan Cluster
Y Tachi, Y Okamoto, H OkumuraScientific Reports 9 (1), 6853, 2019201
33
2019
Molecular science of fluctuations toward biological functions
M Terazima, M Kataoka, R Ueoka, Y OkamotoSpringer, 2016201
18
2016
Implementation of replica-exchange umbrella sampling in GAMESS
S Ito, DG Fedorov, Y Okamoto, S IrleComputer Physics Communications 228, 152-162, 2018201
12
2018
Conformational changes of ubiquitin under high pressure conditions: A pressure simulated tempering molecular dynamics study
Y Mori, Y OkamotoJournal of Computational Chemistry 38 (15), 1167-1173, 2017201
12
2017
Two polyhedral frameworks of an M12L24 spherical complex revealed by replica-exchange molecular dynamics simulations
Y Tachi, S Sato, M Yoneya, M Fujita, Y OkamotoChemical Physics Letters 714, 15-19, 2019201
8
2019
Implementation of replica-exchange umbrella sampling in the DFTB+ semiempirical quantum chemistry package
S Ito, S Irle, Y OkamotoComputer Physics Communications 204, 1-10, 2016201
8
2016
Determination of the structural ensemble of the molten globule state of a protein by computer simulations
M Shimizu, Y Kajikawa, K Kuwajima, CM Dobson, Y OkamotoProteins: Structure, Function, and Bioinformatics 8 (8), 635-645, 2019201
7
2019
Conformational properties of an artificial GM1 glycan cluster based on a metal-ligand complex
Y Tachi, Y Okamoto, H OkumuraThe Journal of Chemical Physics 149 (13), 2018201
7
2018
Modeling 15N NMR chemical shift changes in protein backbone with pressure
G La Penna, Y Mori, R Kitahara, K Akasaka, Y OkamotoThe Journal of Chemical Physics 145 (8), 2016201
7
2016
Computational analysis for selectivity of histone deacetylase inhibitor by replica-exchange umbrella sampling molecular dynamics simulations
S Tsukamoto, Y Sakae, Y Itoh, T Suzuki, Y OkamotoThe Journal of Chemical Physics 148 (12), 2018201
7
2018
Enhanced sampling method in molecular simulations using genetic algorithm for biomolecular systems
Y Sakae, JE Straub, Y OkamotoJournal of Computational Chemistry 40 (2), 475-481, 2019201
6
2019
Efficient simulation protocol for determining the density of states: Combination of replica-exchange Wang-Landau method and multicanonical replica-exchange method
T Hayashi, Y OkamotoPhysical Review E 100 (4), 043304, 2019201
6
2019
Structural characteristics of monomeric Aβ42 on fibril in the early stage of secondary nucleation process
K Noda, Y Tachi, Y OkamotoACS Chemical Neuroscience 11 (19), 2989-2998, 2020202
5
2020
Calculation of the residual entropy of Ice Ih by Monte Carlo simulation with the combination of the replica-exchange Wang–Landau algorithm and multicanonical replica-exchange …
T Hayashi, C Muguruma, Y OkamotoThe Journal of Chemical Physics 15 (), 2021202
4
2021
Protein structure predictions by enhanced conformational sampling methods
Y OkamotoBiophysics and Physicobiology 16, 3-366, 2019201
4
2019
Two major stable structures of amyloid-forming peptides: amorphous aggregates and amyloid fibrils
N Nishikawa, Y Sakae, T Gouda, Y Tsujimura, Y OkamotoMolecular Simulation 3 (13-16), 1370-1376, 2017201
4
2017

Referred From: https://scholar.google.com/citations?hl=en&user=4XMv5IoAAAAJ

Cited by
Citations 17370
h-index 54
i10-index 146
Recommended Journals
Open Access Journals