Author

Juyoung Lee

College of Chemistry, Seoul National University, South Korea - Cited by 1,416 - AI-assisted Drug Discovery - Molecular Dynamics - Computational Biology - Free Energy Calculation

Biography

Juyoung Lee working in the Korea Forest Service, 1 Government Complex, 189 Cheongsa-ro, Seo-gu, Daejeon 302-701, Republic of Korea. He has published more than 30 articles, In the field of Geography, Natural Disasters, Earth Science, Climatic conditions,  Natural Hazards
Title
Cited by
Year
Assessment of network module identification across complex diseases
S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ...Nature methods 16 (9), 843-852, 2019201
202
2019
Random forest-based protein model quality assessment (RFMQA) using structural features and potential energy terms
B Manavalan, J Lee, J LeePloS one 9 (9), e106542, 2014201
78
2014
Constant pH molecular dynamics in explicit solvent with enveloping distribution sampling and Hamiltonian exchange
J Lee, BT Miller, A Damjanovic, BR BrooksJournal of Chemical Theory and Computation 10 (7), 2738–2750, 2014201
74
2014
Modularity optimization by conformational space annealing
J Lee, SP Gross, J LeePhysical Review E 85 (5), 056702, 2012201
73
2012
De novo protein structure prediction by dynamic fragment assembly and conformational space annealing
J Lee, J Lee, TN Sasaki, M Sasai, C Seok, J LeeProteins: Structure, Function, and Bioinformatics 79 (8), 2403-2417, 2011201
59
2011
AK-score: accurate protein-ligand binding affinity prediction using an ensemble of 3D-convolutional neural networks
Y Kwon, WH Shin, J Ko, J LeeInternational journal of molecular sciences 21 (22), 8424, 2020202
48
2020
What stabilizes close arginine pairing in proteins?
D Lee, J Lee, C SeokPhys. Chem. Chem. Phys. 15, 5844-5853, 2013201
47
2013
LigDockCSA: Protein–ligand docking using conformational space annealing
WH Shin, L Heo, J Lee, J Ko, C Seok, J LeeJournal of Computational Chemistry 32 (15), 3226–3232, 2011201
44
2011
Protein structure modeling for CASP10 by multiple layers of global optimization
K Joo, J Lee, S Sim, SY Lee, K Lee, S Heo, IH Lee, SJ Lee, J LeeProteins: Structure, Function, and Bioinformatics 82, 188-195, 2014201
43
2014
A statistical rescoring scheme for protein–ligand docking: Consideration of entropic effect
J Lee, C SeokProteins: Structure, Function, and Bioinformatics 70 (3), 1074-1083, 2008200
43
2008
Improved network community structure improves function prediction
J Lee, SP Gross, J LeeScientific Reports 3, 02197, 2013201
42
2013
Can AlphaFold2 predict protein-peptide complex structures accurately?
J Ko, J LeeBioRxiv, 2021.07. 27.453972, 2021202
40
2021
Cooperativity and Specificity of Cys2His2 Zinc Finger Protein−DNA Interactions: A Molecular Dynamics Simulation Study
J Lee, JS Kim, C SeokThe Journal of Physical Chemistry B 114 (22), 7662-7671, 2010201
40
2010
Computational scheme for pH‐dependent binding free energy calculation with explicit solvent
J Lee, BT Miller, BR BrooksProtein Science 25 (1), 231-243, 2016201
39
2016
Hidden Information Revealed by Optimal Community Structure from a Protein-Complex Bipartite Network Improves Protein Function Prediction
J Lee, J LeePLoS ONE 8 (4), e60372, 2013201
38
2013
Transition between B-DNA and Z-DNA: Free Energy Landscape for the B− Z Junction Propagation
J Lee, YG Kim, KK Kim, C SeokThe Journal of Physical Chemistry B 114 (30), 9872-9881, 2010201
37
2010
Template based protein structure modeling by global optimization in CASP 11
K Joo, IS Joung, SY Lee, JY Kim, Q Cheng, B Manavalan, JY Joung, ...Proteins: Structure, Function, and Bioinformatics 84, 221-232, 2016201
36
2016
Enhancing constant-pH simulation in explicit solvent with a two-dimensional replica exchange method
J Lee, BT Miller, A Damjanovic, BR BrooksJournal of Chemical Theory and Computation 11 (6), 2560-2574, 2015201
35
2015
Blind prediction of distribution in the SAMPL5 challenge with QM based protomer and pK a corrections
FC Pickard, G König, F Tofoleanu, J Lee, AC Simmonett, Y Shao, ...Journal of Computer-Aided Molecular Design 30, 1087-1100, 2016201
35
2016
Calculating distribution coefficients based on multi-scale free energy simulations: an evaluation of MM and QM/MM explicit solvent simulations of water-cyclohexane transfer in …
G König, FC Pickard, J Huang, AC Simmonett, F Tofoleanu, J Lee, ...Journal of computer-aided molecular design 30, 989-1006, 2016201
33
2016

Referred From: https://scholar.google.com/citations?hl=en&user=y7Q_DK0AAAAJ

Cited by
Citations 1416
h-index 23
i10-index 36
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